[Buckle et al (2005) Nature Methods.
2
,3]
[Chow et al (2005) Protein Expr Purif.
46
, 166-171]
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BLAST Sequence
Protein Folding Database
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Version:
4.0
Last Updated:
2009-09-19
Refolding entries:
1157
Proteins:
759
Families:
260
Organisms:
327
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Protein
PROTEIN
Protein
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CAMP-specific cyclic nucleotide phosphodiesterase PDE8A1 (1)
Endostatin (1)
Erythrocyte membrane protein 1 (1)
Hemagglutinin HA2 chain (1)
Human Gelatinase A (1)
Non-structural protein 1 (2)
1-aminocyclopropane-1-carboxylate synthase (1)
10 kDa chaperonin groES protein (2)
18 kDa cyclophilin, Cyclophilin-18 (2)
2-amino-3-ketobutyrateCoA ligase (2)
3,5-cyclic nucleotide phosphodiesterase 7A (1)
3,5-cyclic phosphodiesterase B (1)
3-hydroxyanthranilic acid dioxygenase (1)
30K protein (1)
4-aminobutyrate aminotransferase, mitochondrial also known as GABA transaminase (1)
5,10-methylenetetrahydroforate reductase (1)
5-hydroxytryptamine 4 receptor (2)
56kDa type-specific outer membrane antigen (3)
60 kDa chaperonin groEL protein (2)
A-protein (1)
A33R homolog gene protein (1)
Acetylcholine Receptor alpha-Subunit (1)
Acetylcholinesterase (1)
Activating transcription factor 5 (1)
Acutin (1)
ADAMTS13 (1)
Adenylate kinase (1)
Adrenodoxin (1)
Adrenomedullin (1)
Aequorin (1)
Agmatinase (1)
Alanine--glyoxylate aminotransferase (1)
Alfa- glucosidase (1)
Alkaline phosphatase (1)
Alkaline protease (1)
Alpha-1-Antichymotrypsin (2)
Alpha-1-Antitrypsin (2)
Alpha-1-microglobulin (1)
Alpha-2-macroglobulin (1)
Alpha-amylase (1)
Alpha-fetoprotein (2)
Alpha-tocopherol transfer protein (1)
Alternansucrase (1)
Aminoglycoside nucleotidyltransferase(2")-Ia (1)
AMP-Forming acetyl-CoA synthetase (1)
Amyloid beta A4 protein Cleaved into: Beta-amyloid protein 42 (1)
Androgen receptor (AR)-associated coregulator 70 (1)
Angiogenin (2)
Angiogenin-3 (1)
Angiogenin-4 (1)
Angiogenin-related protein (1)
Annexin 5A (2)
Annexin B1 (1)
Anti-human ferritin antibody F11 VL domain (2)
anti-Tumor necrosis factor single chain Fv (1)
Antimicrobial peptide 1 (1)
APG8a (At4g21980) autophagy protein (1)
Apical membrane antigen 1 (18)
Apolipoprotein C-II (1)
Apolipoprotein(a) (1)
Apolipoprotein(a)(lipoprotein kringle) (5)
apoptotic protease activating factor (1)
Arg specific Gingipain 1 (1)
Arginine Deiminase (1)
Aspartic proteinase Asp1 (1)
Aspartyl protease (1)
Aspergillopepsin-2 (1)
AtMinD1 (2)
ATP synthase epsilon chain (1)
ATP synthase F1 beta subunit (1)
ATP synthase subunit alpha (1)
B and T lymphocyte attenuator variant also known as BTLA protein (1)
B lymphocyte stimulator (1)
Basic membrane protein A precursor (1)
Basic membrane protein B (1)
Basic membrane protein C (1)
Basic membrane protein D (1)
Bcl-2 (1)
Beauveria bassiana Chitinase (1)
Beta 1, 4 galactosyltransferase I (32)
Beta amyloid cleaving enzyme 2 (1)
Beta crystallin A1 (1)
Beta crystallin A3 (1)
Beta crystallin A4 (1)
Beta crystallin B1 (2)
Beta galactoside alpha 2,6 sialyltransferase (1)
Beta-1,3-glucan recognition protein 2 also known as BetaGRP-2 (1)
Beta-2-microglobulin (4)
Beta-bungarotoxin A5 chain (1)
Beta-casein (1)
Beta-glucosidase (2)
beta-lactamase (2)
Beta-lactamase inhibitory protein II (1)
Beta-lactoglobulin A (1)
Beta-secretase 2 also known as Memapsin-1 (1)
Beta-site APP cleaving enzyme 1 (1)
Bikunin Placental (3)
Bivalent e23 dsFv (1)
Blue copper-binding protein (1)
Bm95 protein (1)
Bone morphogenetic protein 3 (1)
Bone morphogenetic protein 7 (1)
Bone morphogenetic protein-2 (2)
Bothropstoxin-I (1)
Botulinum neurotoxin type A (1)
Bovine serum albumin (2)
Bowman-Birk Inhibitor (1)
Brain-derived neurotrophic factor (1)
Brazzein (1)
Bryodin 1 (1)
C-C motif chemokine 4 Also known as MIP-1-beta (1)
C-phycoerythrin class I alpha chain (1)
C-terminal processing protease of the D1 protein (1)
C-type lectin also known as asialofetuin-binding C-type` (1)
C1-Inhibitor (1)
C4b-binding protein alpha chain also known as Proline-rich protein (1)
Calcium Channel Beta1b-subunit (1)
Calcium-binding protein C also known as Calcium-binding protein 3 (1)
Candidapepsin (1)
Canstatin (1)
Capsid protein VP60 (1)
CapZ alpha-2 subunit (1)
CapZ beta-1 subunit (1)
Carbonic Anhydrase B (1)
Carbonic anhydrase bovine erythrocytes (2)
Carbonic anhydrase IV (1)
Carboxypeptidase Y (1)
Cardiotoxin analogue III (1)
Carnitine/acylcarnitine carrier protein mitochondrial (1)
Casbene synthase (1)
Casein kinase II subunit alpha (1)
Casein kinase II subunit alpha-1-subunit beta-1 (1)
Cathepsin B (1)
Cathepsin L (1)
Cathepsin L1 also known as papain prosegment (1)
Cauliflour mosaic virus capsid protein (2)
CC Chemokine Lymphotactin (2)
CC Chemokine RANTES (1)
CD14 (1)
CD1a (1)
CD1b (1)
CD23 antigen Also known as Low affinity immunoglobulin epsilon Fc receptor (1)
CD4 (1)
CD59 glycoprotein (1)
CD69 Early activation antigen (1)
CDC10-dependent transcription 1 (1)
Cell division control protein 42 homolog (3)
Cell division protein ftsH (1)
Cell division topological specificity factor (1)
Cerastocytin also known as Proaggregant serine proteinase (1)
CFP21 (1)
CHA-II protein (1)
chemoattractive glycoprotein ES20 (1)
Chemotaxis inhibitory protein (2)
Chitin deacetylase (1)
Chitinase A1 (1)
Chitinase ECH30 (1)
Chlorate reductase subunit gamma (1)
Cholera enterotoxin subunit A [Precursor] (2)
Cholera enterotoxin subunit B Also known as Cholera toxin B subunit (1)
Chymotrypsin inhibitor (1)
Ciliary neurotrophic factor receptor alpha (1)
CipA scaffoldin (1)
Circumsporozoite protein (1)
Citrate synthase (1)
Class I histocompatibility antigen HLA-A (2)
CLIPB14 (1)
Clumping factor A (1)
Clumping factor B (1)
Coagulation factor VIII (1)
Cobrotoxin (1)
Cocaine- and amphetamine-regulated transcript peptide (3)
Collagenase 3 Also known as Matrix metalloproteinase-13 (1)
Complement receptor type1 (2)
Complement regulatory protein Crry (1)
Conglutinin (1)
Corrinoid/iron-sulfur protein (1)
Creatine kinase (3)
Creatine kinase M-type (2)
CREB-binding protein (2)
CtcB (1)
CtcC (1)
Culture Filtrate Protein 10 (1)
CX3C chemokine fractalkine (2)
Cyanovirin-N (1)
Cyclodextrin glucanotransferase (1)
Cyclomaltodextrin glucanotransferase (2)
Cyclophilin also known as Peptidyl-prolyl cis-trans isomerase A (1)
Cyclophilin, Variant A (1)
Cystatin C (1)
Cysteine protease 14 (1)
Cysteine protease falcipain-2 (1)
Cysteine proteinase (3)
Cysteine proteinase B (1)
Cystic fibrosis transmembrane conductance regulator (1)
Cytochrome b6 (1)
cytochrome c (1)
Cytomegalovirus protease (1)
Cytosolic phospholipase A2 (4)
Cytotoxic T-lymphocyte protein 4 (2)
Cytotoxin B C-terminal domain (1)
D-lactate dehydrogenase (1)
D-ornithine aminomutase E component (1)
Daniplestim (interleukin-3 variant) (1)
DASH complex subunit DAD1 (1)
Daunorubicin resistance protein (1)
De novo designed protein - TIM barrel (4)
Decay accelerating factor (CD55) (1)
Decorin (1)
Defensin (1)
Dehydrodolichyl diphosphate synthase (1)
DELLA protein RGL3 (1)
Delta crystallin (Argininosuccinate lyase) (1)
Delta-like1 (1)
Dengue virus type 2 envelope domain III (1)
Der f 1 (1)
Der f2 (1)
Dermcidin (1)
DevS Histidine Protein Kinase (1)
Dihydrofolate Reductase (1)
Dihydrofolate reductase-thymidylate synthase (1)
Dihydrolipoamide dehydrogenase (1)
Dihydrolipoyl dehydrogenase, mitochondrial (1)
Dihydroorotate dehydrogenase (1)
Diisopropylfluorophosphatase (2)
Dimethylglycine dehydrogenase (2)
DNA methylguanine methyltransferase (1)
DNA polymerase beta (1)
DNA Polymerase Delta (1)
DNAS1_BOVIN (1)
Dual specificity protein phosphatase 7 (2)
Duffy binding protein (1)
Dystrophin (1)
Early protein GP1 (1)
Eco29kI restriction endonuclease (1)
Ectonucleoside triphosphate diphosphohydrolase 6 (CD39L2) (1)
Elongation factor G (4)
Enhanced Green Fluorescent Protein (1)
Enterokinase light chain (2)
Enteropeptidase (2)
EnterotoxinA C-terminal domain (1)
Epidermal Growth Factor (3)
Erbin also known as Protein LAP2 (1)
ERCC1 (2)
Erythromycin C-12 Hydroxylase (1)
Erythromycin resistance protein also known as rRNA adenine N-6-methyltransferase (1)
Erythropoietin Receptor (2)
Estrases also known as EstB2 (1)
Estrogen receptor beta (1)
ETS1 (2)
Exo-beta-1,4-glucanase (1)
Exopolyphosphatase (1)
Extracellular domain of myelin oligodendrocyte glycoprotein (1)
Extracellular Superoxide Dismutase (2)
Extracellular zinc metalloprotease (1)
Falcipain-2(prime) (1)
Farnesoid X-activated receptor (1)
Fas ligand interfering protein (1)
Fel d 1 (1)
Ferric enterobactin receptor (1)
Ferric uptake regulation protein (1)
Ferritin light chain (1)
Fibrinogen-binding protein (1)
Fibrinolytic enzyme (1)
Fibritin (1)
Fibroblast growth factor receptor (1)
Fimbrial subunit also known as pilin subunit (1)
Flavohemoprotein (Globin domain) (1)
Flotillin-1 (1)
Fusion protein consisting of interleukin 13 and pseudomonas exotoxin (1)
G protein-coupled receptor G alpha subunit (1)
Gamma-crystallin C (1)
Gamma-crystallin E (1)
Gamma-interferon-induced monokine (1)
GATA-type transcription factor (1)
Gelatinase B also known as Matrix metalloproteinase-9 & 92 kDa gelatinase (1)
Gelonin-acetylcholine receptor alpha sub unit (1)
General odorant-binding protein 1 (1)
General odorant-binding protein 2 (1)
Geranylgeranylated Rab7 protein (1)
Glucagon-like peptide 1 receptor (1)
Glucoamylase (1)
Glucocorticoid-induced TNF receptor (1)
Glucose 6-phosphate dehydrogenase (1)
Glucose dehydrogenase (1)
Glutamate mutase (1)
Glutamate receptor 2 (3)
Glutamyl-tRNA reductase (1)
Glyceraldehyde-3-phosphate dehydrogenase (2)
Glycine receptor alpha-1 chain precursor (2)
Glycoprotein (recombinant glycoprotein vaccine) (1)
goldfish Growth hormone I (1)
Goldfish growth hormone II (1)
gp21 ectodomain fragment (1)
gp36 ectodomain fragment (1)
gp41 ectodomain fragment (1)
Gram-negative bacteria-binding protein 1 (1)
Gram-negative bacteria-binding protein 2 (1)
Gram-negative bacteria-binding protein 3 (1)
Granulocyte colony-stimulating factor (1)
granulocyte-macrophage colony-stimulating factor (2)
Granzyme B (2)
Granzyme K (1)
Growth Hormone (11)
Growth Hormone Receptor (2)
Growth/differentiation factor 5 (1)
H-ras (1)
Haemoglobin alpha subunit (1)
Hahellin (1)
Heat shock protein 26 (1)
Hemagglutinin (1)
Hen egg- white lysozyme (7)
Heparin-binding neurite-promoting factor (2)
Heparinase I also known as Heparin lyase I (1)
Hepatitis B virus X antigen (1)
Hepatitis C virus core protein (3)
Hepcidin_20 (1)
High affinity immunoglobulin epsilon alpha chain (2)
Histocompatibility leukocyte antigen-Cw4 (1)
HIV protease (5)
HIV tat protein (1)
HIV-1 Rev binding protein-like (1)
HIV-1 Reverse transcriptase (1)
HLA class I histocompatibility antigen B (3)
HLA class II histocompatibility antigen, DR alpha chain (1)
HPV16 E7-MS2 polymerase fusion (1)
HRP/Fatty acid-binding protein, heart fusion (1)
Human chorionic gonadotropin alpha subunit (1)
Human Collagenase-3 (MMP-13) (1)
Human Complex-forming glycoprotein HC (1)
Human Gelatinase A without fibronectine like insert (1)
Human Granulocyte colony-stimulating factor (4)
human granulocyte-macrophage colony-stimulating factor (1)
Human immunodeficiency virus type-1 protease (1)
Human Leukocyte Antigen DR2 (2)
Human leukocyte antigen DR2 alpha chain (2)
Human leukocyte antigen DR2 beta chain (2)
Human leukocyte antigen DR3 beta chain (1)
Human leukocyte antigen DR4 beta chain (1)
Human macrophage elastase catalytic domain (1)
Human paraoxonase (1)
Human Placental Bikunin (1)
Human Serum Albumin (3)
Human T-cell leukemia virus type I protease (1)
Hypothetical 27 kDa protein Also known as: PPE FAMILY PROTEIN (1)
IgG (MAK33) CH2 domain (1)
Immulectin-3 (1)
Immunogenic protein mpt64 (1)
Indole 3-glycerol phosphate synthase (1)
Insulin (1)
Insulin-like growth factor binding protein 3 (1)
Insulin-like growth factor II (3)
Integrase (2)
Integration host factor alpha subunit (1)
Integration host factor beta subunit (1)
Integrin beta-2 (3)
Interferon Alpha 2a (1)
Interferon Beta (1)
Interferon gamma (12)
Interferon gamma receptor (1)
Interferon regulatory factor 4 (1)
Interferon regulatory factor 8 (2)
Interleukin-1 beta-converting enzyme (2)
Interleukin-1 receptor antagonist protein (1)
Interleukin-13 (2)
Interleukin-13 receptor alpha-2 (1)
Interleukin-2 (3)
Interleukin-21 (1)
Interleukin-4 (2)
Interleukin-5 (1)
Interleukin-6 (2)
Interleukin-7 (1)
Isocitrate dehydrogenase (1)
Isopenicillin N synthetase (1)
Kallikrein-4/Prostase (1)
Keratinase (2)
Keratoepithelin (1)
Large structural protein (1)
Lectin (4)
Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type (1)
Lectin-like oxidised LDL receptor (1)
Leptin (11)
Leukemia inhibitory factor receptor (1)
Leukocyte cell-derived chemotaxin 2 (1)
Leukotriene B4 receptor 1 (1)
Levansucrase (1)
Light harvesting complex II (1)
Lignin peroxidase (2)
Link module from human TSG-6 (2)
Lipase (4)
Lipase chaperone (1)
Lipase from Burkholderia cepacia (3)
Lipase from Rhizopus oryzae (3)
Liver receptor homolog 1 (1)
LMW Urokinase Plasminogen Activator (1)
Low affinity IgE Fc Receptor (1)
Low density lipoprotein receptor (1)
Luciferase (3)
Luciferase (Luciferin 4-monooxygenase) (1)
Luciferase 39 (1)
Lumazine synthase 2 (1)
Lupanine hydroxylase (1)
Lutropin Receptor (1)
Lymphotoxin-alpha also known as TNF-beta (1)
Lysophospholipase (1)
Lysozyme (26)
Lysyl oxidase (2)
Lysyl-tRNA synthetase (1)
Macrophage colony-stimulating factor (2)
Macrophage inflammatory protein 1-beta (1)
Macrophage Metalloelastase (MMP-12) (2)
Magnesium chelatase D subunit (1)
Major allergen Asp F1 (1)
Major histocompatibility complex class I (5)
Major outer membrane protein P.IB (1)
malate dehydrogenase (1)
Maltose-binding protein (1)
Manganese peroxidase (1)
Manganese-binding protein (1)
Mannose-binding lectin (2)
MAP domain protein (1)
MAP kinase phosphatase 3 (1)
Matrilysin (1)
Matriptase also known as Suppressor of tumorigenicity protein 14 (1)
Matrix metalloprotease 13 (2)
Matrix metalloprotease 19 (4)
Matrix metalloproteinase 1 (1)
Matrix metalloproteinase-14 Also known as MMP-14 (1)
Mavicyanin (1)
Membrane channel porin (1)
Merezoite surface protein 3 (3)
Merozoite surface protein 8 (1)
Merozoite Surface Protein-1 (4)
metalloprotease also know as Zinc metalloproteinase/disintegrin (1)
Metalloproteinase inhibitor 1 also known as Tissue inhibitor of metalloproteinas (1)
Methionine Adenosyltransferase (1)
MHC class I Mamu-A 01 (1)
MHC class II antigen RT1.D alpha chain (1)
MHC class II antigen RT1.D beta chain (1)
MHC ClassII HLA-DR-beta (1)
Microneme protein SML2 [Fragment] (1)
Minichromosome maintenance 8 (1)
Mitochondrial oxoglutarate-malate carrier protein (1)
Mitochondrial Release Factor 1 (3)
Mitogen-activated protein kinase 14 ,p38 alpha (1)
Monoclonal anti-idiotypic Schistosoma japonicum antibody NP30 immunoglobulin lig (1)
Monoclonal Antibody K1 (1)
Monogalactosyldiacylglycerol synthase (1)
Mu-type opioid receptor (1)
Mucrofibrase 1 (1)
Mucrosobin also known as Mucrofibrase-1 (1)
Multiple antibiotic resistance protein marA (1)
Myc proto-oncogene protein (1)
myelin oligodendrocyte glycoprotein (1)
Myoglobin (1)
Myostatin (1)
Myotoxin alpha (3)
N-carbamoyl-D-amino acid amidohydrolase (1)
NAD specific glutamate dehydrogenase (1)
NADP-dependant Ds-threo-isocitrate dehydrogenase (1)
Natural killer cells antigen CD94 (2)
Neuroserpin (1)
Neurotoxin B-IV (1)
Neurotrophin-3 (1)
Neurotrophin-4/Neurotrophin-5 (1)
Neutrophil collagenase (1)
New thrombolytic agent (2)
NFkB p50/p65 heterodimer (2)
NifU-like protein 1, chloroplast Also known as OsNifu1 (1)
Nikkomycin biosynthesis protein SanV (1)
Nitrile hydratase (1)
Nitrogen fixation regulatory protein (1)
Nitrophorin from Cimex lectularius (1)
nitrophorins 1-4 from Rhodnius prolixus (1)
NK cell activating receptor NKp44 (1)
NLH-Rv1399c (1)
non-POU domain-containing octamer binding protein (1)
Non-specific lipid-transfer protein (1)
Non-structural glycoprotein 4 (1)
NS2B-NS3 Protease (2)
Nuclease (1)
Nucleocapsid protein (1)
Nucleoprotein (1)
Nucleoprotein Severe acute respiratory syndrome coronavirus (1)
Olfactory receptor 5 (1)
Oligopeptide binding protein (1)
Onconase (1)
Oncoprotein E7 (1)
Opacity protein B128 (1)
Opacity Protein J129 (1)
OriC-binding nucleoid-associated protein (1)
Osmotin-like protein (1)
Outer Membrane Phospholipase A (1)
Outer membrane porin M35 (1)
Outer membrane protein 21 (2)
Outer membrane protein A (3)
Outer membrane protein C (1)
Outer membrane protein Class 5 protein (1)
Outer membrane protein F (1)
Outer membrane protein G (1)
Outer membrane protein OprM (2)
Outer membrane protein OprN (1)
Outer membrane protein P2 Also known as Bac porin (1)
Outer membrane protein X (24)
oxaloacetate decarboxylase, apha-subunit (1)
oxoglutarate-malate carrier (1)
P-Glycoprotein (10)
P53 tumor suppressor (1)
p55-hGRF (truncated form of Ras-GDP exchange factor) (2)
p58 natural killer cell inhibitory receptor (2)
Pancreatic secretory trypsin inhibitor (1)
Parathyroid hormone/parathyroid hormone-related peptide receptor (1)
Pectinesterase inhibitor (1)
Penicillin-binding protein 1 (3)
Penicillin-Binding Protein 2a (2)
Penton base protein (1)
Pepsin A (2)
Peroxidase C1C (1)
Peroxidase N (1)
Pertactin Cleaved into: Outer membrane protein P.69 (1)
Phage lambda terminase enzyme (1)
Pheromone-binding protein (2)
Phosphate carrier protein, mitochondrial (1)
Phospholipase A2 (2)
Phospholipase A2 BA2 (1)
Phospholipase A2, ammodytoxin A (2)
Phospholipase C (1)
Phosphomannose isomerase (1)
Phosphorylase Kinase Gamma T (1)
Photoactivated adenylate cyclase subunit alpha (2)
Photosystem Q(B) protein (1)
Phytase (1)
Picorain 3C (Protease 3C) (1)
Pigment epithelium-derived factor (1)
Placental lactogen (13)
Plasma retinol-binding protein (1)
Plasmepsin 2 (1)
Plasminogen (2)
Plasminogen Activator Inhibitor-1 (1)
Plasmodium Vivax duffy binding protein (1)
Platelet-derived growth factor (2)
Poly-zinc finger protein 1 (1)
Polyhydroxyalkanoate synthase (1)
Polyhydroxyalkanote depolymerase (1)
PorB (class 3) porin (1)
Porcine Growth hormone (1)
PPE FAMILY PROTEIN (1)
PR domain-containing protein 2 Also known as Zinc finger protein RIZ (1)
Prion (4)
prion-like yeast protein (1)
Pro-Falcipain-2 (2)
Pro-subtilisin (1)
ProCathepsin D (2)
ProCathepsin K (2)
Procathepsin L (2)
Prochymosin (6)
ProDer p 1 (1)
Profilin I (1)
Profilin II (1)
Programmed cell death protein 1 (1)
Prohibitin (2)
Proinsulin (3)
Prokineticin-2 (1)
Prolactin (10)
Prolactin I (1)
Prolactin II (1)
Prolactin receptor extracellular domain (3)
Promegapoietin-Ia (1)
Prostasin (1)
Prostate-specific antigen (1)
Protease 3C (1)
Proteasome subunit alpha type-5 (2)
Protective antigen (1)
Protein A33 (1)
Protein decapentaplegic (1)
Protein E7 (1)
Protein Kinase C (1)
Protein p1 (1)
Protein translocase SecA (1)
Protein-tyrosine phosphatase sigma (1)
Proteinase inhibitor PSKP-1 (1)
Prothermolysin (1)
Prothiolsubtilizin E (1)
Prothrombin (1)
PSC33 (Ara h 6) (1)
Pseudomonas sp. MIS38 Lipase (5)
Putative AC transposase (1)
Putative uncharacterized protein (1)
Pyrimidine dimer DNA glycosylase (1)
Pyruvate formate-lyase activating enzyme (1)
Quinolinate synthetase (1)
Rad51A protein (1)
Rad51B Protein (1)
Rad52 (1)
Rapamycin target protein (1)
Rapamycin-binding protein (1)
Rec12 meiotic recombinase (1)
Receptor-type adenylate cyclase GRESAG 4 (3)
RecJ Single-stranded DNA specific exonuclease (1)
Recombinant grass pollen hybrid molecule (1)
Regulator of ribonuclease activity A (gene RV3853) (1)
Regulatory protein (1)
Replication Protein A 70 (1)
Resistin (4)
Retinoblastoma-associated protein (1)
Retropepsin (1)
Rhizopuspepsin (1)
Rhizopuspepsinogen (1)
Rho-associated protein kinase 2 (1)
Rhoptry protein (1)
Riboflavin synthase 2 beta chain (1)
Ribonuclease 2 (1)
Ribonuclease A (12)
Ribonuclease mitogillin also known as Restrictocin (1)
Ribonuclease pancreatic (2)
Ribosomal protein P0 (1)
Ribosomal protein P1-like protein (1)
Ribosome-inactivating protein gelonin (1)
Ricin B chain (1)
RNA Dependent RNA Polymerase (1)
RNA polymerase (3)
RNA polymerase sigma factor rpoD (1)
RNA-editing complex protein MP42 (3)
RNase E C-terminal Domain (1)
RT1 class II histocompatibility antigen (2)
RV1120c (hypothetical protein) (1)
S-phase delaying protein 1 (1)
SAG1 protein also known as P30 (1)
Salivary allergen 1 (1)
scFv anti-crotoxin (1)
scFv mAbB23, specific for apolipoprotein B-100 (1)
Secreted luciferase (1)
Secreted protein acidic and rich in cysteine (1)
Self-incompatibility protein (1)
Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein (1)
Serine protease/NS3 protein/helicase NS3 (6)
Serine-repeat antigen protein (2)
Serine/threonine protein kinase PKB (1)
Serotonin N-acetyltransferase (3)
Serpin A5 (also known as Protein Inhibitor 3, Plasminogen Activator Inhibitor 3) (1)
Serum Retinol Binding Protein (2)
Shiga toxin 1 B subunit (1)
SIK W1 lipase (1)
Single Chain Fv (3)
Single chain Fv 125E11 (1)
Single chain Fv 1E4 (anti-preS1 of hepatitis B virus) (1)
Single chain Fv HyHEL-10 (1)
Single chain Fv MabA34, specific for human apolipoprotein A-I (1)
Single chain monoclonal antibody 4-4-20 (1)
Single-chain FV-Asparaginase Fusion protein (1)
Sj Serpin (1)
Snakin-1 (1)
Somatotropin (Mink Growth hormone) (1)
Somatotropin also known as Growth hormone (5)
Staphylokinase (2)
Stefin B (1)
Steroleosin (1)
Streptavidin (9)
Streptokinase (1)
Stromal cell-derived factor-1a (3)
Stromelysin 1 (1)
Subtilisin BPN (3)
Succinate dehydrogenase (1)
Suppressors of cytokine signalling (1)
Surface antigen protein 1 (1)
T cell receptor beta 2.1 chain (1)
T lymphocyte activation antigen CD86/B7-antigen (1)
T-cell receptor (4)
T-cell receptor 2B4 single chain Fv (1)
T-cell receptor A6 alpha chain (2)
T-cell receptor A6 beta chain (2)
T-Cell receptor D10 single chain (1)
Tailspike Protein (1)
Tax (1)
Tcell alpha chain (1)
Teratocarcinoma-derived growth factor 1 (2)
Testis expressed transcript protein (1)
TGF-beta receptor type II (3)
Thermopsin (1)
Thrombopoietin (1)
Thrombopoietin receptor (1)
Tissue factor pathway inhibitor (2)
Tissue inhibitor of metalloproteinase (1)
Tissue-type plasminogen activator (3)
TNF-related apoptosis-inducing ligand (1)
Tobacco anionic peroxidase (1)
Toll-interleukin 1 receptor domain-containing adapter protein inducing interferon (1)
Torsin-1A Also known as: Dystonia 1 protein (1)
Tousled-like kinase 1 also known as Serine/threonine-protein kinase tousled-like (1)
Toxin 5 (1)
Toxin yoeB (1)
Trafficking protein particle complex subunit 6A (1)
Transcription factor Sp1 (1)
Transforming growth factor beta 1 (1)
Transforming growth factor beta 2 (2)
translation initiation factor eIF-4E (1)
Translocase of the outer mitochondrial membrane Tom40 (1)
Transposase Tc1A (1)
trappin-2 (elafin) (1)
Triacylglycerol lipase (1)
Trichosanthes kirilowii defensin (1)
Triosephosphate isomerase (1)
Troponin T, fast skeletal muscle isoforms (1)
Trypsin (1)
Trypsin inhibitor (1)
Trypsin Inhibitor (TI) (1)
Trypsinogen (2)
Tubulin beta chain (2)
Tumor necrosis factor (TNF)-stimulated gene-6 (1)
Tumor necrosis factor alpha (2)
Tumor necrosis factor receptor 1 (1)
Tumor necrosis factor receptor 2 (1)
Tumor suppressor p16 (1)
tumour necrosis factor alpha single-chain variable fragment (1)
Type 1 ribosome-inactivating protein musarmin le (1)
Type II DNA topoisomerase VI (1)
Type XI collagen alpha-1 chain (1)
UL82as (1)
Uncoupling protein 2 (1)
Urodilatin (1)
Urokinase-type plasminogen activator (3)
UvrA Protein (7)
Vascular endothelial growth factor (7)
Vascular endothelial growth factor B (1)
VirG (1)
Virulence factors putative positive transcription regulator bvgA (3)
Virulence sensor histidine kinase phoQ (1)
Voltage-dependent Anion Channel 1 (1)
xylanase (1)
Yersiniabactin transcriptional regulator (2)
Ykt6p SNARE (1)
Yolk cathepsin (1)
ZEBRA protein also known as Z protein (1)
Zona pellucida glycoprotein-C (1)
SCOP Class
Alpha
Alpha+Beta
Alpha/Beta
Beta
Low resolution protein structures
Membrane and cell surface proteins and peptides
Multi-domain proteins (alpha and beta)
Small Proteins
Unknown
Family
Protein kinases, catalytic subunit
Anthrax protective antigen
Blood coagulation inhibitor (disintegrin)
Caspase recruitment domain, CARD
Cell cycle control phosphatase, catalytic domain
Cyclophilin (peptidylprolyl isomerase)
DNase I-like
Endostatin
Formate/glycerate dehydrogenases, NAD-domain
FUR-like
Gingipain R (RgpB), N-terminal domain
GroEL chaperone, ATPase domain
GroES
Hepcidin
Interleukin-1 (IL-1)
Major surface antigen p30, SAG1
Methylenetetrahydrofolate reductase
N-acetyl transferase, NAT
Neurotransmitter-gated ion-channel transmembrane pore
Nuclear receptor ligand-binding domain
Pepsin-like
Peptidase A4 [101656]
Photosystems [58157]
Plant antimicrobial protein MIAMP1
Plant lipid-transfer and hydrophobic proteins
Proteasome subunits
Troponin coil-coiled subunits
Type II chitinase
Viral cysteine protease of trypsin fold
Virulence factor P.69 pertactin
2Fe-2S ferredoxin-related
Acetyl-CoA synthase
Acetylcholinesterase-like
Adenylyl and guanylyl cyclase catalytic domain
Alkaline phosphatase
alpha-Amylases, C-terminal beta-sheet domain
alpha-D-mannose-specific plant lectins
Amine oxidase N-terminal region
Aminoacid dehydrogenase-like, C-terminal domain
aminotransferases
Amyloid peptides
Annexin
Anticodon-binding domain
Apical membrane antigen 1
AraC type transcriptional activator [46759]
Avidin/streptavidin
Bacterial AB5 toxins, B-subunits
Bacterial lipase
Band 7/SPFH domain
Bcl-2 inhibitors of programmed cell death
beta 1,4 galactosyltransferase (b4GalT1)
Beta-lactamase inhibitor protein-II, BLIP-II
beta-Lactamase/D-ala carboxypeptidase
Bowman-Birk Inhibitor
C-type lectin domain
C-type Lysozyme
C1 set domains (antibody constant domain-like)
Cadherin
Calmodulin-like
Capz alpha-1 subunit
Capz beta-1 subunit
Carbamilase
Carbonic anhydrase
Caspase catalytic domain
CCP-like
Cell division protein MinE topological specificity domain
Cellulose-binding domain family II
Cellulose-binding domain family III
chemoattractive glycoprotein
Citrate synthase
Classic zinc finger
Clostridium neurotoxins, C-terminal domain
Coagulation factor VIII, membrane-binding peptide
Cobalamin (vitamin B12)-binding domain
Coiled-coil
Complement control module/SCR domain
Coronavirus nucleocapsid protein
Crystallins/Ca-binding development proteins
Cu,Zn superoxide dismutase-like
Cutinase
Cyanovirin-N
Cyclic nucleotide phosphodiesterase
Cyclophilin (peptidylprolyl isomerase)
Cystathionine synthase-like
Cystatins
Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Cytochrome P450
Cytokine receptors/Fibronectin Type III
Dihydrofolate reductases
Diisopropylfluorophosphatase (phosphotriesterase, DFP)
Dimeric isocitrate & isopropylmalate dehydrogenases
DNA helicases
DNA polymerase type-B
DNA Replication
DNA topoisomerase IV, alpha subunit
Dual specificity phosphatase-like
E-set domains of sugar-utilizing enzymes
EF-hand modules in multidomain proteins
EGF-type module
Elafin-like
enteropeptidase
Epsilon subunit of F1F0-ATP synthase C-terminal domain
Esterase
Eukaryotic Proteases
Exonuclease RecJ
Extended AAA-ATPase domain
Extracellular domain of cell surface receptors
F-actin capping family
FAD/NAD-linked reductases, N-terminal and central domains
Family 1 of glycosyl hydrolase
Fatty acid binding protein-like
Ferredoxin reductase FAD-binding domain-like
Fibrinogen-binding domain
Fibritin
Fibronectin type III
FKBP immunophilin/proline isomerase
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
Fluorescent proteins
Fragments of apolipoproteins
Fungal lipases
G proteins
GABA-aminotransferase-like
Globins
Glucoamylase
Glutaminase/Asparaginase
Glutamyl tRNA-reductase catalytic, N-terminal domain
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
Gonadotropin/Follitropin
Group V grass pollen allergen
Guanido kinase catalytic domain
Guanido kinase N-terminal domain
Helicase
Hemorrhagin
Herpes virus serine proteinase, assemblin
HLH, helix-loop-helix DNA-binding domain
Homologous-pairing domain of Rad52 recombinase
Hormone/Growth Factor
I set domains
Immunoglobulin light chain kappa variable domain
Influenza hemagglutinin (stalk) [58065]
Inositol polyphosphate 5-phosphatase (IPP5)
Insect pheromone/odorant-binding proteins
Insulin-like
Integrin beta EGF-like domains
Interferons/interleukin-10 (IL-10)
Intergral-membrane protein
interleukin 8-like chemokines
Kringle Modules
Kunitz-type serine protease inhibitor
LDL receptor-like module
Legume lectins
Ligand-gated protein channel
Light-harvesting complex subunits
Link domain
Long-Chain Cytokines
Long-chain scorpion toxins
Lumazine synthase
Major surface antigen p30, SAG1
Malate dehydrogenase
Matrix metalloproteases, catalytic domain
Merozoite surface protein 1 (MSP-1)
MHC antigen-recognition domain
Midkine, a heparin-binding growth factor, C-terminal domain
MMP N-terminal domain
monodomain cytochrome C
Monomeric isocitrate dehydrogenase
Myotoxin
Neurotoxin B-IV
Neurotrophin
NF-kappa-B/REL/DORSAL transcription factors, C- terminal domain
Nitrile hydratase beta chain
NSP4 oligomerization domain
Nucleotide and nucleoside kinases
nucleotidyltransferases
Osteonectin
Outer membrane phospholipase A (OMPLA)
Outer membrane protein
P22 Tailspike Protein
p53 DNA-binding domain-like
Papain-like Cysteine Proteinases
Parathyroid hormone fragments (residues between 1 and 39)
PDEase
PDZ domain
PE
Penicillin binding protein dimerisation domain
Pepsin Like
Pepsin-like proteases
PFL-like
Phage Repressor
Phosphate binding protein-like
Phospholipase C
Phycobilisome
Plant cytotoxins
Plant defensins
Plasmodium
Plastocyanin/azurin-like
Platelet-derived growth factor-like
PLC-like (P variant)
Porin
Ppx/GppA phosphatase
Prion-like
Profilin (actin-binding protein)
Prokaryotic DNA-bending protein
Prolamin
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
Proteinase/alpha-amylase inhibitors
RecA protein-like (ATPase-domain)
Recombinase DNA-binding domain
Resistin (Pfam 06954)
Retinol binding protein-like
Retroviral protease (retropepsin)
Rhodopsin Like
Ribonuclease A-like
Ribotoxin
Ricin B-like
RNA dependent RNA polymerases
RNA-polymerase beta-prime
RraA-like
S-adenosylmethionine synthetase
Satiety factor CART (cocaine and amphetamine regulated transcript)
Sec-C motif
Seed storage protein, 2S albumin
Serine carboxypeptidase-like
Serpins
Serum albumin-like
Serum paraoxonase/arylesterase 3, PON3
Short Chain Cytokines
Sigma2 domain of RNA polymerase sigma factors
SLC25
Small Kunitz-type inhibitors & BPTI-like toxins
Snake venom toxins
SPRY domain
Staphylokinase/streptokinase
Starch-binding domain
Subtilases
Succinate dehydrogenase
Tail specific protease PDZ domain
TAZ domain
Thermolysin-like
Thermostable phytase (3-phytase)
Tissue inhibitor of metalloproteinases, TIMP
TNF receptor-like
TNF-like
Transforming growth factor (TGF)-beta
Translation initiation factor eIF4e
Transmembrane helical fragments
Triosephosphate isomerase (TIM)
Tryptophan biosynthesis enzymes
Tubulin, GTPase domain
Type I phosphomannose isomerase
Tyrosine kinase receptor
Unknown
Uteroglobin like
V set domains (antibody variable domain-like)
V set domains (antibody variable domain-like); C1 set domains (antibody constant domain-like)
Vertebrate phospholipase A2
Viral glycoprotein, central and dimerisation domains
Viral proteases [50596]
virus ectodomain
YoeB/Txe-like
Organism
Goose (Anser anser anser)
Synechococcus sp. (strain WH8102)
Actinidia deliciosa (Kiwi)
Adenovirus Type 2
Aeromonas salmonicida
Agkistrodon acutus
Agkistrodon halys brevicaudus (Korean slamosa snak
Agkistrodon halys pallas (Chinese water mocassin)
Agrobacterium radiobacter
Agrobacterium tumefaciens
Anabaena sp.
Anopheles gambiae
Antheraea polyphemus
Aqueorea victoria
Arabidopsis thaliana
Arachis Hypogaea
Archaeoglobus fulgidus
Armoracia rusticana (Horseradish) (Armoracia lapha
Aspergillus fumigatus
Aspergillus niger
Aspergillus niger
Aspergillus restrictus
Azotobacter vinelandii
Bacillus amyloliquefaciens
Bacillus anthracis
Bacillus anthracis
Bacillus caldolyticus
Bacillus cereus
Bacillus circulans
Bacillus licheniformis
Bacillus macerans
Bacillus sp. 01-855
Bacillus subtilis
Bacillus thermoproteolyticus
Bacillus thuringiensis
Bacteriophage K11
Bacteriophage lambda
Bacteriophage P22
Bacteriophage phi-29
Bacteriophage phi-29
Bacteriophage T4
Barley (Hordeum vulgare)
Bauhinia bauhinioides
Beauveria bassiana
Bertholletia excelsa
Bombyx mori
Bonnet Monkey
Boophilus microplus
Boophilus microplus (Cattle tick)
Bordetella pertussis
Borrelia burgdorferi
Bothrops jararacussu
Bovine
bovine erythrocytes
Bovine Leukemia Virus
Brucella abortus
Brucella abortus
Bryonica dioica
Bungarus multicinctus (Many-banded krait)
Burkholderia cepacia (Pseudomonas cepacia)
Burkholderia cepacia KWI-56
C. elegans
Candida albicans
Candida tropicalis
Carp (Cyprinus carpio)
Cauliflower Mosaic Virus
Cavia porcellus (Guinea pig)
Cavia porcellus (Guinea pig)
Cavia porcellus (Guinea pig)
Cavia porcellus (Guinea pig)
Cellulomonas fumi
Cepaea hortensis
Cerastes cerastes (Horned desert viper)
Cerebratulus lacteus (Milky ribbon worm)
Chicken (Gallus gallus)
Chicken Egg White
chinese cobra Nanja atra
Chlamydia trachomatis
Chlamydia trachomatis
Chlamydolphila pneumoniae
Chlamydophila abortus
Cimex lectularius
Clostridium botulinum
Clostridium difficile
Clostridium sticklandii
Clostridium tetanomorphum
Clostridium tetanomorphum
Clostridium tetanomorphum
Clostridium thermocellum
Cobra (naja naja naja)
Colletotrichum lindemuthianum
comamonas acidovorans
Comamonas acidovorans
Common snowdrop (Galanthus nivalis)
Corn
Crassostrea gigas (Pacific oyster) (Crassostrea an
Crotalus viridis viridis
Ctenocephalides felis (Cat flea)
Cucumaria echinata
Cucurbita pepo (Squash)
Cucurbita pepo (Vegetable marrow) (Summer squash)
Cysticercus cellulosae
De novo designed protein
Dendrobium officinale
Dengue virus type 2
Dengue virus type 2
Dermatophagoides farinae (dust mite)
Dermatophagoides pteronyssinus (House-dust mite)
Dictyostelium discoideum
Dog (Canis familiaris)
Dolichos biflorus seeds
Dolichos biflorus seeds
Dolichos biflorus seeds
Dolichos biflorus seeds
Drosophila melanogaster
Drosophila melanogaster (Fruit fly)
Ectromelia virus
Entamoeba histolytica
Epinephelus awoara (yellow grouper fish)
Epstein-Barr virus
Equine infectious anemia virus (isolate CL22) (EIA
Erwinia chrysanthemi
Erythrina cristagalli
Escherichia coli
Escherichia coli O9:H4 (strain HS)
Euglena gracilis
Fasciola gigantica
Felis domesticus (cat)
Felis silvestris catus (Cat)
Firefly (Luciola lateralis)
Flavobacterium heparinum
Flavobacterium sp.
Galanthus nivalis (Common snowdrop)
Gelonium multiflorum
Giardia lamblia
Gilthead seabream (Sparus aurata)
goldfish
Haemonchus contortus (Barber pole worm)
Haemophilus influenzae
Hahella chejuensis
Haloarcula marismortui
Halobacterium mediterranei (Haloferax mediterranei
Haloferax volcanii
Hantaan virus
Hen
Hepatitis B virus
Hepatitis C virus
Hepatitis C virus genotype 1b
Hepititis E Virus
HIV
HIV-1
HIV-2
Horse (Equus caballus)
HTLV
Human
Human cytomegalovirus
Human papillomavirus
Human rhinovirus
Human SARS coronavirus
Ideonella dechloratans
Influenza A virus
Japanese encephalitis virus
Lates calcarifer (Barramundi)
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Leuconostoc mesenteroides
Lingulodinium polyedrum
Litopenaeus vannamei
Loligo vulgaris
Lumbricus rubellus (Humus earthworm)
Lumbricus terrestris
Macaca mulatta (Rhesus macaque)
Macadamia nut (Macadamia integrifolia)
Maize
Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm
Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm
Metridia longa
Micrococcus luteus
Moorella thermoacetica (Clostridium thermoaceticum
Moraxella catarrhalis
Mouse
Multiple species
Muscari armeniacum L.
Mustela vison (American mink)
Mycobacterium tuberculosis
Mycoplasma arginini
Naja atra (Chinese cobra)
Neisseria meningitidis
NF-kappa-B/REL/DORSAL transcription factors, C- te
Nostoc ellipsosporum (Cyanobacterium)
Oncorhynchus masou (Cherry salmon) (Masu salmon)
Oncorhynchus mykiss
Oreochromis mossambicus (Mozambique tilapia)
Oreochromis niloticus
Orientia tsutsugamushi/Rickettsia tsutsugamushi
Oryza sativa
Oryza sativa L.
Ovis aries (sheep/ovine)
Papaver rhoeas
Paracoccidioides brasiliensis
Pea seed
Pentadiplandra brazzeana
Peptostreptococcus magnus
Phage P22
Phanerochaete chrysosporium
Phleum pratense (Common timothy)
Photinus pyralis (North American firefly)
Phyllomedusa sauvagei (Sauvage\'s leaf frog)
Physcomitrella patens
Physeter catodon
Pig (Longissimus dorsi)
Pig (Sus scrofa)
Pisum sativum (Garden pea)
Plasmodium chabaudi
Plasmodium falciparum
Plasmodium Vivax
Plasmodium yoelii
Plecoglossus altivelis (ayu)
Pneumocystis carinii
Poliovirus type 3
porcine
Porphyromonas gingivalis
Pseudomonas aeruginosa
Pseudomonas fluorescens
Pseudomonas fluorescens
Pseudomonas fluorescens
Pseudomonas putida
Pseudomonas sp.
Pseudomonas sp. MIS38
Pyrococcus furiosus
Pyrococcus furiosus
Pyrococcus furiosus
Pyrococcus furiosus
Pyrococcus horikoshii
Pyrococcus horikoshii
Pyrococcus horikoshii
Pyrococcus horikoshii
Pyrococcus horikoshii
Pyrococcus woesei
Rabbit (Oryctolagus cuniculus)
Rabbit hemorrhagic disease virus (RHDV)
Rana pipiens (Northern leopard frog)
Rat
Rattus norvegicus (Rat)
Renilla reniformis (Sea pansy)
Rhizopus chinensis
Rhizopus oryzae
Rhodnius prolixus
Rhodobacter sphaeroides
Rhodococcus sp.
Rhodopseudomonas blastica
Rhodospirillum rubrum
Rice
Ricinus communis
S. cerevisiae
Saccharomyces cerevisiae
Saccharomycopsis fibuligera
Saccharopolyspora erythraea
Salmonella typhi Ty21a
Salmonella typhimurium
Sarcocystis muris
Schistosoma japonicum
Schizosaccharomyces pombe
Schizosaccharomyces pombe (Fission yeast)
Scorpion (C. noxius)
Sendai virus (strain Fushimi)
Sesamum indicum (Oriental sesame) (Gingelly)
Siganus guttatus (Rabbitfish)
Simian rotavirus
Solanum chacoense (Chaco potato)
Solanum nigrum (Black nightshade)
Solanum tuberosum (Potato)
Sparus aurata (Gilthead seabream)
Spinacia oleracea
Spirinchus lanceolatus
Staphylococcus aureus
Staphylococcus sp.
Streptococcus equisimilis
Streptococcus pneumoniae
Streptomyces ansochromogenes
Streptomyces avidinii
Streptomyces exfoliatus
Streptomyces fradiae
Streptomyces peucetius
Sub
Sulfolobus acidocaldarius
Sulfolobus shibatae
Synechochystis sp. PCC 6803
Syrian hamster
Taiwan cobra
Taiwan habu (Trimeresurus mucrosquamatus)
Thermococcus kodakarensis KOD1
Thermococcus kodakarensis KOD1
Thermococcus sp.B1001
Thermotoga maritima
Thermus thermophilus
Thunnus albacares (Yellowfin tuna) (Neothunnus mac
Torpedo californica
Torpedo marmorata
Toxoplasma gondii
Trichoderma atroviride
Trichosanthes kirilowii
Trichosurus vulpecula (Brush-tailed possum)
Trifolium repens
Trimeresurus mucrosquamatus
Triticum aestivum (Wheat)
Trypanosoma brucei
Trypanosoma cruzi
Unknown
Vaccinia virus (strain Western Reserve / WR) (VACV
Vibrio cholerae
Vipera ammodytes ammodytes (Western sand viper)
Viral hemorrhagic septicemia virus
West Nile virus (WNV
Western equine encephalitis
Xanthomonas axonopodis pv. citri
Xenopus laevis
Xenorhabdus
Xenorhabdus nematophila
Yeast (Candida albicans)
Yeast (Candida rugosa)
yeast (Pichia pastoris)
Yeast (Saccharomyces cerevisiae)
Yersinia enterocolitica
Zea mays (Maize)
Zymomonas mobilis
Number of Records
=
>
<
Construct
CONSTRUCT
Molecularity
14-mer
Dimer
Heptamer
Heterodimer
Hexamer
Monomer
Octamer
Pentamer
Tetramer
Trimer
Unknown
Disulphides
=
>=
Unknown
0
1
2
3
4
5
6
7
8
9
10
>10
Pfam Domain
2-Hacid_dh
2-Hacid_dh_C
2OG-FeII_Oxy
3-HAO
7tm_1
7tm_6
A1_Propeptide
A2M_recep
AAA
ABC_tran
Abhydrolase_1
Abhydrolase_3
Acetyltransf_1
AChE_tetra
Adeno_Penton_B
ADH_N
adh_short
ADK
Adrenomedullin
Ail_Lom
Alk_phosphatase
Alpha-amylase
Alpha-amylase_C
AMA-1
Amidase_2
Amidinotransf
Aminoglyc_resit
Aminotran_1_2
Aminotran_3
Aminotran_5
AMP-binding
Ank
Annexin
ANP
Apo-CII
ArfGap
Arginase
Arylesterase
Asp
ATP-gua_Ptrans
ATP-gua_PtransN
ATP-synt_ab
ATP-synt_ab_C
ATP-synt_ab_N
ATP-synt_DE
ATP-synt_DE_N
Autotransporter
Avidin
B12-binding
Bac_DNA_binding
Band_7
Bcl-2
Beta-APP
Beta-lactamase
BH4
Binary_toxB
Biotin_lipoyl
BLUF
Bmp
Bowman-Birk_leg
BRCT
bZIP_1
B_lectin
C1-set
C1_1
C2
C4
Calici_coat
Carbpep_Y_N
Carb_anhydrase
CARD
CART
Casein
Ca_channel_B
CbiA
CBM_2
CBM_20
CBM_5_12
CdhD
CDT1
Chloroa_b-bind
Chordopox_A33R
Citrate_synt
CK_II_beta
Cna_B
CN_hydrolase
COesterase
Collagen
Corona_nucleoca
Cpn10
Cpn60_TCP1
CRAL_TRIO
CRAL_TRIO_N
Crystall
CSF-1
Cu-oxidase
Cu-oxidase_2
Cu-oxidase_3
CUB
Cutinase
Cu_amine_oxid
Cu_bind_like
CVNH
CW_binding_1
Cystatin
Cytochrom_B_N
Cytochrom_C
DAO
DASH_Dad1
DHFR_1
DHH
DHHA1
DHHA2
DHODB_Fe-S_bind
Disintegrin
DMRL_synthase
DNA_binding_1
DNA_pol_B
DNA_pol_B_exo
DNA_pol_lambd_f
DPBB_1
DSL
DSPc
DUF1939
DUF1965
DUF1968
DUF2436
DUF326
Duffy_binding
E1_DerP2_DerF2
E7
EB_dh
ecTbetaR2
EFG_C
EFG_IV
efhand
EGF
ELFV_dehydrog
ELFV_dehydrog_N
EMI
Endonuclease_NS
Endostatin
Enterotoxin_a
Enterotoxin_b
EpoR_lig-bind
EPO_TPO
Ets
Exotox-A_bind
Exotox-A_cataly
Exotox-A_target
Exo_endo_phos
F-actin_cap_A
F5_F8_type_C
FAD_binding_2
FAD_binding_6
FAINT
Fasciclin
Feld-I_B
Fer2
Ferritin
FeS
Fibritin_C
Fimbrial
FKBP_C
Flavi_DEAD
Flavi_glycoprot
Flavi_glycop_C
Flavi_NS1
Flavi_NS2B
fn1
fn2
fn3
FOLN
FTP
FtsH_ext
FUR
F_actin_cap_B
G6PD_C
G6PD_N
GAF
Gag_p17
Gag_p24
Galactosyl_T_2
Gamma-thionin
GASA
GATA
GCV_T
GCV_T_C
GDA1_CD39
GerE
GFP
Globin
GlutR_dimer
GlutR_N
Glyco_hydro_1
Glyco_hydro_11
Glyco_hydro_15
Glyco_hydro_18
Glyco_hydro_3
Glyco_hydro_3_C
Glyco_hydro_68
Glyco_hydro_70
Glyco_transf_29
GM_CSF
GP41
Gp_dh_C
Gp_dh_N
Gram_pos_anchor
GRAS
GST_C
GST_N
GTP_EFTU
GTP_EFTU_D2
Guanylate_cyc
Haemat_rec_S_F2
Hanta_nucleocap
hATC
HATPase_c
HCV_capsid
HCV_core
HCV_env
Head_binding
Hemagglutinin
HemolysinCabind
Hemopexin
Hepcidin
HHA
HHH
HisKA
HisKA_3
HLH
HMGL-like
Hormone_1
Hormone_6
Hormone_recep
HR1
HRM
HSP20
HTH_AraC
H_lectin
IDH
IF4E
IFN-gamma
IFNGR1
ig
IGF2_C
IGFBP
IGPS
IL1
IL13
IL2
IL3
IL4
IL5
IL6
IL7
IL8
Inhibitor_I29
Inhibitor_I9
Insulin
Integrase
Integrase_Zn
Interferon
IRF
IRF-3
Iso_dh
Kazal_1
Kazal_2
Kringle
Kunitz_BPTI
Kunitz_legume
Laminin_G_2
Ldh_1_C
Ldh_1_N
Ldl_recept_a
Lectin_C
Lectin_legB
Leptin
Lig_chan
Lig_chan-Glu_bd
Lipase3_N
Lipase_3
Lipase_chap
Lipocalin
Lipoprotein_11
LRRNT
LRR_1
Lyase_1
Lys
Lys-AminoMut_A
Lysyl_oxidase
MAM
MAP
MAP1_LC3
MCM
MecA_N
Merozoite_SPAM
Methyltransf_1N
Methyltransf_6
Met_asp_mut_E
MGDG_synth
MHC_I
MHC_II_alpha
MHC_II_beta
MHC_I_C
MiAMP1
MinE
Mito_carr
MSP1_C
MTHFR
Myc-LZ
Myc_N
Myotoxins
NadA
NAD_binding_1
Na_K-ATPase
NB-ARC
Neur_chan_LBD
Neur_chan_memb
NGF
NHase_alpha
NHL
NifU
Nitrophorin
NOPS
NTF2
OEP
OmpA
OmpA_membrane
OmpW
Opacity
OpcA
p450
P53
P53_TAD
P53_tetramer
PA14
PAN_1
Paramyx_RNA_pol
PAS
PBP_dimer
PBP_GOBP
PCRF
PDEase_I
PDGF
PDZ
PepSY
Peptidase_A4
Peptidase_C1
Peptidase_C14
Peptidase_C25
Peptidase_C25_C
Peptidase_C3
Peptidase_M10
Peptidase_M23
Peptidase_M4
Peptidase_M41
Peptidase_M4_C
Peptidase_S10
Peptidase_S21
Peptidase_S29
Peptidase_S41
Peptidase_S7
Peptidase_S8
peroxidase
Pertactin
PG_binding_1
PhaC_N
PhageP22-tail
Phage_Nu1
PhoQ_Sensor
Phospholip_A2_1
Photo_RC
Phycobilisome
Phytase
Pkinase
Pkinase_C
PLA1
Plasmid_Txe
Plug
PMEI
PMI_typeI
Pollen_allerg_1
Pollen_allerg_2
Polysacc_deac_1
Porin_1
Porin_3
Porin_OmpG
PPE
PQQ
PQQ_C
PQQ_N
Prenyltransf
Prion
Prion_octapep
Profilin
Prokineticin
Propeptide_C1
Proteasome
Proteasome_A_N
Pro_isomerase
PT
PTN_MK_C
PTN_MK_N
PYC_OADA
Pyr_redox
Pyr_redox_2
Pyr_redox_dim
Rad51
Rad52_Rad22
Radical_SAM
Rapamycin_bind
Ras
RasGEF
RasGEF_N
RB_A
RB_B
Rb_C
RdRP_2
Rep-A_N
Reprolysin
Rep_fac-A_C
Resistin
Response_reg
RE_Eco29kI
RF-1
Rhabdo_glycop
RHD
Rhodanese
Ribonuclease
Ribosomal_60s
Ribosomal_L10
Ricin_B_lectin
RIP
RnaseA
RnaseH
RNase_HII
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_Rpb1_1
RNA_replicase_B
RNR_inhib
Rota_NSP4
RRM_1
RrnaAD
rve
RVP
RVT_1
RVT_connect
RVT_thumb
S-AdoMet_synt_C
S-AdoMet_synt_M
S-AdoMet_synt_N
SAG
SAM_PNT
SBP_bac_1
SBP_bac_5
SBP_bac_9
SdrG_C_C
SEA
SEC-C
SecA_DEAD
SecA_PP_bind
SecA_SW
Self-incomp_S1
Serpin
Serum_albumin
SET
SGL
SH2
Shikimate_DH
Sigma54_activat
Sigma70_ner
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r2
Sigma70_r3
Sigma70_r4
SLT_beta
SNase
Sod_Cu
SPARC_Ca_bdg
SRCR
Staphylcoagulse
Staphylokinase
Succ_DH_flav_C
Surfac_D-trimer
Sushi
Synaptobrevin
Tat
Terpene_synth
Terpene_synth_C
TGFb_propeptide
TGF_beta
Thaumatin
Thermopsin
Thioredoxin
Thrombin_light
TIG
TIM
TIMP
TLV_coat
TNF
TNFR_c6
TonB_dep_Rec
Torsin
Toxin_1
Toxin_13
Toxin_3
Toxin_R_bind_C
TP6A_N
Transgly
Transpeptidase
Transposase_5
Trans_reg_C
TRAPP
Trefoil
tRNA-synt_2
tRNA_anti
Troponin
Trypsin
Tryp_alpha_amyl
TSA
TSP_1
Tubulin
Tubulin_C
ubiquitin
UPAR_LY6
Uteroglobin
V-set
WAP
WXG100
Xlink
YSIRK_signal
Y_phosphatase
zf-BED
zf-C2H2
zf-C4
zf-CCHC
zf-TAZ
Zn_dep_PLPC
Zona_pellucida
Chain Length
=
<>
<
>
<=
>=
Molecular Weight (Da)
=
<>
<
>
<=
>=
pI
=
<>
<
>
<=
>=
Expression
EXPRESSION
Solubility
Not Stated
Soluble
Partial
Insoluble
Project Aim
Analysis
Analysis
Analysis
Antigenic Determinant Identification
Assembly
Biophysical Studies
Cloning and expression
Crystallography
Diagnostic studies
Drug Studies
Evolutionary Studies
Expression and charactrization
Expression and identification
Folding
Functional Studies
Identification and Characterization
NMR
Over expression & Renaturation
Protein isolation
Protein Labeling
Protein refolding
Protein Transduction
Protein-Protein Interaction Identification
Purification & characterization
Recombinant Protein Expression
Structural Studies
Structure-Function
Undefined
Vaccine studies
Fusion
B1 domain of Streptococcal protein G
Beta-galactosidase
C-LytA
C-terminal BirA substrate peptide
c-terminal cysteine
C-terminal hexahis + pro seq
C-terminal hexahis +V6 epitope
C-terminal hexahistidine + tryptophan
C-terminal hexahistidine tag
C-terminal hexahistidine tag+GST tag
C-terminal intein
C-terminal luciferase
C-terminal luciferase
C-terminal luciferase
C-terminal maltose binding protein
C-terminal maltose-binding protein
C-terminal myc tag
C-terminal polar/charged tail
C-terminal polylysine tag
C-terminal sequence
C-terminal streptavidin
C-terminal T7 tag
Ftr
GST
N terminal hexa His tag + TEV cleavage sequence
N-terminal +C terminal Glycine-serine dipeptide
N-terminal +C terminal hexahistidine tag
N-terminal +C terminal hexahistidine tag + thioredoxin tag
N-terminal and C-terminal poly-histidine tags
N-terminal fibronectin cell-binding domain
N-terminal first 11 codons of gene 10 of phage T7
N-terminal FkpA/SlyD and C-terminal Hexahistidine Tag
N-terminal GST
N-terminal GST + pro-sequence
N-terminal GST and C-terminal hexahis
N-terminal hexahis + pro seq
N-terminal hexahis + TAT sequence
N-terminal hexahis + Trx Tag
N-terminal hexahis + Xpress tag
N-terminal Hexahis tag + HMK recognition sequence
N-terminal hexahistidine and GST tag
N-terminal hexahistidine tag
N-terminal hexahistidine tag + thrombin cleavage site
N-terminal hexahistidine tag + thrombin cleavage site
N-terminal hexahistidine tag + thrombin cleavage site
N-terminal hexahistidine tag +c terminal solubilization enhancing domain (SED)
N-terminal hexahistidine tag and autolytic cleavage sequence
N-terminal hexahistidine tag and factor Xa-cleavage site
N-terminal hexahistidine tag and Protein S peptide tag
N-terminal human growth hormone portion (aa.1-122)
N-terminal IgG tag
N-terminal interferon gamma
N-terminal KSI sequence, C-terminal hexahistidine tag
N-terminal KSI sequence, C-terminal hexahistidine tag
N-terminal maltose binding protein
N-terminal maltose-binding protein tag/C-terminal His tag
N-terminal methionine
N-terminal methionine+C terminal his-tag
N-terminal MS-2 polymerase
N-terminal OmpA and Pro
N-terminal OmpA signal sequence
N-terminal pepsinogen
N-terminal poly-histidine tag
N-terminal polyhistidine peptide tag
N-terminal Protein A
N-terminal S-tag
N-terminal small ubiquitin-related modifier (SUMO)
N-terminal staphylococcal nuclease
N-terminal streptavidin
N-terminal T7 tag
N-terminal thioredoxin
N-terminal thioredoxin + hexahistidine tag
N-terminal thioredoxin tag/C-terminal hexahistidine tag
N-terminal TrpE + C-terminal six arginine
N-terminus CII and beta-globin residues 1-18
Non-purification fusion - see notes
None
P2 tetanus toxoid T-helper epitope was coupled to the N-terminus
pro sequence
ScFX
ScFX
T7
Thioredoxin
Method of Induction
3 Beta-indoleacrylic acid (IAA)
3-beta-indoleacrylic acid
Arabinose
Autoinduction
Bacteriophage lambda
beta-indoleacrylic acid
Carbenicillin
IPTG
IPTG + glucose
Methanol
N-(beta-ketocaproyl)-DL-homoserine lactone
NaCl
Nalidixic Acid
Not Stated
Temperature Shift
Tryptophan starvation
Tryptophan-rich induction solution
Protein Expression and Production
Protein expressed and purified in native conformation prior to denaturation and refolding
Protein synthesized by chemical means (not recombinant) and refolded
Protein recombinantly expressed as and refolded from inclusion bodies
Refolding
REFOLDING
Refolding Method
Absorbtion/Centrifugation
Additive-introduced stepwise dialysis
Boiling
Centrifugal filtration
Chaperone-assisted refolding
Chaperone-assisted/reversed micelles
Chitin Column Chromatography
Column refolding- Immobilized Metal affinity chromatography (IMAC)
Column refolding-Expanded bed adsorption chromatography (EBA)
Column refolding: affinity immobilization
Column refolding: Cobalt-chelating chromatography
Column refolding: hydrophobic interaction chromatography
column refolding: ion-exchange chromatography
Column refolding: Nickel-chelating chromatography
Column refolding: Oxidative refolding chromatography
Column refolding: protein immobilization
Column refolding: size exclusion chromatography with partner subunits
Column refolding: Size-exclusion chromatography
Detergent precipitation/sequestration
Diafiltration
Dialysis
Dilution
Dilution and expand bed absorption (EBA)
Dilution into detergent
Dilution with complex partner subunits
Dilution/ chaperone-assisted refolding
Dilution/Column Refolding Combination
Dilution/Dialysis combination
Gel filtration
Gel filtration with pH and denaturant gradients
High Pressure
Liquid-Liquid Extraction
Matix assisted dialysis
matrix assisted refolding/ renaturing gel filtration
Multi-walled carbon nanotubes
NDSB
Novexin Kit
Other
Reversed Micelles
Three phase partitioning
zeolite assisted refolding
pH
=
<>
<
>
<=
>=
Temp (°C)
=
<>
<
>
<=
>=
Protocol
Start With
Contains
ends with
is
like
Wash Buffer
Start With
Contains
ends with
is
like
Solubilization Buffer
Start With
Contains
ends with
is
like
Refolding Buffer
Start With
Contains
ends with
is
like
Molecular Chaperones
alpha-crystallin
DnaJ
DnaK
DsbA
GroEL
GroEL minichaperone
GroES
GrpE
None
none
PPI
Rabbit RL (Hsp90,Hsc70,Hsp40)
RNA
sht GroEL191-345
SlyD/FkpA
Redox Agent
Beta-mercaptoethanol
Beta-mercaptoethanol/Cystamine
Beta-mercaptoethanol/GSH-GSSG
Cu2+
Cystamine
cysteamine/cystamine
Cysteine
Cysteine/Cystine
Dimethyl Sulfoxide (DMSO)
DL-cystine
DL-DTT
DTT
DTT/Beta mercaptoethanol
DTT/cystamine
DTT/cysteine
DTT/cysteine/cystine
DTT/PMSF
GSH
GSH/GSSG
GSH/GSSG/DTT
GSH/GSSG/DTT/beta mercaptoethanol
GSSG
GSSG/beta mercaptoethanol
GSSG/DTT
None
Not specified
TCEP (facultative)
Thioredoxin
Refolding Additives
β-Cyclodextrin polymer
α-cyclodextrin
β-cyclodextrin
(NH4)2SO4
1% (v/v) Tween
Brij 35
Brij 35
Calixarrene
CHAPS
cystamine
Detergents
Dextran-grafted-PNIPAAm (DGP)
Ethylene glycol
Glycerol
Glycine
L-Arginine
Lauryl maltoside
Mannitol
N-substitued N-methylimidazolium cations
None
Octylglucoside (OG)
PNIPAAm
Polyethylene glycol (PEG)
Schiff base reagents from Boston Protein Solutions
Schiff base reagents from Boston Protein Solutions
Schiff base reagents from Boston Protein Solutions
sodium dioctyl sulfosuccinate (AOT)
Triton X-100
tween 20
Tween 60
Tween 80
Zwittergent Z-3,14
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The REFOLD team
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